Index

A

AlphaPeptLoader (class in alphastats.loader.AlphaPeptLoader) alphastats.DataSet module alphastats.loader.AlphaPeptLoader module alphastats.loader.DIANNLoader module

alphastats.loader.FragPipeLoader module alphastats.loader.MaxQuantLoader module ancova() (DataSet method) anova() (DataSet method)

C

calculate_tukey() (DataSet method)

create_matrix() (DataSet method)

D

DataSet (class in alphastats.DataSet)

DIANNLoader (class in alphastats.loader.DIANNLoader)

F

FragPipeLoader (class in alphastats.loader.FragPipeLoader)

L

load_metadata() (DataSet method)

M

MaxQuantLoader (class in alphastats.loader.MaxQuantLoader) module alphastats.DataSet alphastats.loader.AlphaPeptLoader alphastats.loader.DIANNLoader alphastats.loader.FragPipeLoader alphastats.loader.MaxQuantLoader

O

overview() (DataSet method)

P

perform_diff_expression_analysis() (DataSet method) plot_clustermap() (DataSet method) plot_correlation_matrix() (DataSet method) plot_dendrogram() (DataSet method) plot_intensity() (DataSet method) plot_pca() (DataSet method)

plot_sampledistribution() (DataSet method) plot_tsne() (DataSet method) plot_umap() (DataSet method) plot_volcano() (DataSet method) preprocess() (DataSet method) preprocess_print_info() (DataSet method)