API reference for alphastats

All important features of alphapeptstats are documented here.

Contents

• DataSet
  • DataSet
  • Factory
  • Harmonizer
  • Preprocessing
  • Statistics
  • Plotting
  • Pathway
  • Utilities
  • Keys
  • ID Holder
• File Loader
  • BaseLoader
  • AlphaPeptLoader
  • DIANNLoader
  • FragPipeLoader
  • GenericLoader
  • MaxQuantLoader
  • mzTabLoader
  • SpectronautLoader
• Plots
  • Clustermap
  • Dimensionality Reduction
  • Intensity Plot
  • Plot Utilities
  • Sample Histogram
  • Volcano Plot
• Statistics
  • ANOVA
  • Differential Expression Analysis
  • MultiCova Analysis
  • Statistic Utilities
  • Tukey Test
• GUI
  • Main GUI
  • AlphaPeptStats GUI
  • GUI Pages
  • GUI Utilities
    • Analysis Helper
    • Analysis Utilities
    • Import Helper
    • LLM Helper
    • Options
    • Overview Helper
    • Preprocessing Helper
    • Results
    • Session Manager
    • State Keys
    • State Utilities
    • UI Helper
    • Upload Custom Analysis
• Other Modules
  • CLI
  • MultiCova
  • Plotly Volcano
  • Tools - Differential Expression Analysis